ok just got done figuring this out on my 2000 3300. Mine might be in totality set up a little different but I think I can answer your question.
The two battery switches are wired to each engine. You should have a starboard switch and a port switch. On my boat the starboard switch is also wired to the house.
Mine has a total of four batteries with a seperate battery for the genset so that might be different for you.
Here's the deal, the batteries are wired to both switches but seperately. You will find two large red wires one going to each of two batteries. On is the #1 position on the switches and the other is for number 2. This gives you the ability to figure out which battery you want to use or both.
My boat also had an additional battery that was wired just to the windlass.
Unless the 2002 models are set with isolators your probably set up the same way. Because of recent battery issues with mine I just gone re-wiring the batteries to provide myself with a backup plan out at sea.
I have two batteries setting side by side that are hooked up the switch position #1 and are connected together. These are for both the house and will crank the engine. I am replacing this week with Group 27 batteries for some extra power.
I then took my new group 24 battery and hooked it up to switch position number 2 by itself. The plan here is to use switch position #1 for everything. It will always charge in the slip and should have a full charge. Only when I kill off those batteries on a long day or battery problem I will then switch over to #2 which will enable me to start the engine, go to both, and recharge the entire bank. After having to switch out batteries by hand at 1am in front of a water bar last weekend I've gone this route.
I have those two banks and the genset battery hooked up to my 3 bank charger for shore charging constantly.
Hope this helps.




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